With the scanner, into the terra incognita: How do you watch roots grow?

December 14, 2017, Reading time: 4 minutes

How do you watch the roots grow of a sugarbeet at a depth of 1.6 yards? It’s quite simple. All you need is a huge drill, long Plexiglas tubes, a special scanner, lots of software for image recognition and a well-prepared KWS research team.

In the field: Benjamin Gruber prepares the scanner for detecting the root system underground.

In the field: Benjamin Gruber prepares the scanner for detecting the root system underground.

The depths of the ocean are probably better explored than the finely branched roots of plants in the ground. It is the roots that decide how well corn, beets or other plants absorb water and nutrients from the soil. So, to some extent, they can help explain how much the farmer needs to irrigate or fertilize. Therefore, roots are an important factor in the breeding of drought-tolerant or nitrogen-efficient new plant species.

How well do plants cope with stress?

In the KWS research department, the Australian Benjamin Gruber and his colleagues explain how root growth can be observed, assessed and quantified. His goal is to test hundreds of plants in a short period of time, to see how well they cope with abiotic stress such as drought or lack of nutrients. This is one of the prerequisites when identifying new plant genes that can support stable yields and drought tolerance. Both are major breeding goals at KWS.

Observing roots and their growth in detail is not trivial: 10.76 square feet of grain field often contains 31 to 60 miles of roots (about 25 to 37 miles for corn, and 12.4 to 31 miles for sugarbeet). Sugarbeet roots protrude up to 16.4 feet deep into the earth. The finest root hairs are consistently thinner than a human hair. How can you achieve an accurate picture?

Dig, rinse and measure

A proven approach with corn follows the comparatively simple, and aptly named “shovelomics” approach: The plant with the root still on it is simply dug up during this “shovel research” and the soil is thoroughly rinsed off. Then, the root can be optically measured with cameras and software. From multiple images, specialists in image analysis and bioinformaticians calculate the number and thickness of the roots and their angle relative to the stem of the plant.

Into the deep: The scanner disappears into the soil.

Into the deep: The scanner disappears into the soil.

Information on branching of the main and secondary roots and many other features are also recorded. “With just one or a few plants, this could be done visually. But to create an effective tool for plant breeding, we must collect hundreds or thousands of roots. This is only possible digitally and automated,” said Gruber. For measuring the root crown, his team cooperates with the Jülich research center. This is not the only collaboration: KWS cooperates internationally with many partners. This includes universities, other institutes and companies.

Images from the Depths

After this type of shovel-in-the-hand research, however, the examined plant is no longer useful. Continuous monitoring under real-life conditions on or in the field would be much better. Gruber drills holes into the ground of beet plots with a special drill. He then places transparent tubes into the ground. With a special scanner, he is able to capture the growing roots. By scanning at specific time intervals, he is able to receive a continuous image from the depths.

What sounds simple, actually involves many attempts, iterations and changes throughout testing. The KWS workshop employees are very used to Gruber coming to them with special assignments. And he would not get far working alone, according to the biotechnologist. Field workers help him drill the holes. Several plant breeders indicate the desired and sought-after characteristics of the plants. KWS image detection specialists contribute to the root system detection. Modern plant breeding is possible only with the interaction of many experts.

  • People at KWS

    Exploring the roots opens up enormous potential for plant breeders.

    Benjamin Gruber, Root researcher

“KWS is currently creating a new toolbox to capture root growth on a large scale. We test new processes and refine what has already been proven. Later, we need to understand which plant with which genetic makeup grows in which soil, and with which nutrient and water supply,” said Gruber. This costs time and money. Both are investments in the future of a company that has existed for more than 160 years and continues to offer growers high-yielding varieties. Family-oriented KWS spends about 17 percent of its revenue on research.

Breeding requires accurate observation.

Exact observation of plant traits, with the purpose of deriving impressions for breeding, is as old as agriculture itself. For example, the first farmers sowed from the thickest grains of the previous year for the next year. Gregor Mendel observed the color and shape of peas to establish his inheritance rules based on these results. With regard to the visible and measurable properties of plants, biologists talk about phenotypes.

Ben Gruber’s approach is similar to other phenotyping projects at KWS. KWS research experts collect data in the environment, either with drone-based cameras or underground scanners. The images are collected on a computer and automatically analyzed to give new clues to the breeders. “All of this has to work on an industrial scale, in wind and rain, in mud and in drought, not just in a lab or with 20 plants. Plant breeding is always a question of large numbers, and thousands of plants must be evaluated,” explained Gruber, before he returned to the statistical analysis of his data.

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